- Xherdan Shaqiri (76')
- Moussa Dembélé (89')
- Matteo Guendouzi (10')
Dembele turned the visiting defenders as he collected the ball with his back to goal before chipping it over the onrushing goalkeeper for a sumptuous finish.
Xherdan Shaqiri had set up the goal with a pass from deep in the midfield, having earlier equalised with a 76th-minute header as Lyon fought back strongly in the second half.
The match was played behind closed doors, having been rescheduled from November when the original fixture was abandoned after Payet was hit by a bottle hurled from the stands at the Groupama Stadium.
Payet fell to the ground as he was getting ready to take a corner after five minutes, and both teams were sent to the dressing room by referee Ruddy Buquet, who then decided to abandon the match after a suspension of almost two hours.
Lyon were docked one point in December but the match was ordered to be replayed, without spectators.
Tuesday's win moved the home side up to seventh while denying Marseille a chance to go second as they lost for the first time in 10 matches in all competitions.
|Stade de Reims||13||6||2||5||0||20|
|Le Havre AC||13||3||7||3||-1||16|